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Cytosim
PI
Cytoskeleton Simulator
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Variables | |
| real | zoom |
zoom factor = ratio between visible area and view_size | |
| real | view_size |
| size of area visible in the window, in sim-units (default=10) | |
| unsigned int | auto_scale |
| enables the display area to be set from the size of the simulation space More... | |
| Vector3 | focus |
| the point that is in the center of the window in real-world coordinates | |
| Vector3 | focus_shift |
| additional translation used by autoTrack | |
| Quaternion< real > | rotation |
| orientation of display | |
| unsigned int | traveling |
| enables auto_translation, auto_zoom or auto_rotation More... | |
| Vector3 | auto_translation |
translation speed of display (known as traveling[1]) More... | |
| Quaternion< real > | auto_rotation |
rotational speed of display (known as traveling[2]) More... | |
| real | auto_zoom |
zooming speed of display (known as traveling[3]) More... | |
| int | window_position [2] |
| position of window on screen (top-left corner, in pixels) | |
| unsigned int | window_size [2] |
desired size of window in pixels (also known as size) | |
| real | scale_bar |
| size of scale-bar in sim-world units | |
| unsigned int | show_scale |
display flag for scale-bar (set as scale_bar[1]) | |
| unsigned int | show_axes |
| display flag for axes | |
| unsigned int | clip_plane_mode [NB_CLIP_PLANES] |
on/off flags for clipping (defined as clip_plane?) More... | |
| Vector3 | clip_plane_vector [NB_CLIP_PLANES] |
direction perpendicular to clipping plane (defined as clip_plane?[1]) | |
| real | clip_plane_scalar [NB_CLIP_PLANES] |
scalar offset defining the equation of the clipping plane (defined as clip_plane?[2]) | |
| unsigned int | track_fibers |
| automatically adjust view to keep fibers in window More... | |
| int | fog_type |
characteristics of OpenGL fog (also known as fog[0]) | |
| real | fog_density |
density of fog (also known as fog[1]) | |
| gle_color | fog_color |
color of fog (also known as fog[2]) | |
| Quaternion<real> auto_rotation |
This is a speed in quaternion / wall-time
| unsigned int auto_scale |
If ( auto_scale > 0 ), the view_size is set automatically to match the simulation space. This is on by default.
| Vector3 auto_translation |
This is a speed in distance / wall-time
| real auto_zoom |
This is a speed in zoom-unit / wall-time
| unsigned int clip_plane_mode[NB_CLIP_PLANES] |
Up to 3 clipping planes can be defined: clip_plane0 to clip_plane2
Syntax:
The Boolean enables the clipping plane. The plane is specified by a normal vector n (VECTOR) and a scalar (REAL). The visible half-space is defined by n.x + a > 0
Example: To define a slice perpendicular to the X-axis of width 2:
| unsigned int track_fibers |
Possible values:
The translation defined by focus is applied after this adjustment.
| unsigned int traveling |
if ( traveling > 0 ), this sets the interval of time in milli-seconds at which the model-view transformation will be updated, by applying auto_translation, auto_zoom and auto_rotation.